Publication list

Corresponding author:@, equal contributions:*


Pierzchlewicz, P. A., Willeke, K. F., Nix, A., Elumalai, P., Restivo, K., Shinn, T., Nealley, C., Rodriguez, G., Patel, S., Franke, K., Tolias, A. S., & Sinz, F. H. Energy Guided Diffusion for Generating Neurally Exciting Images. Thirty-seventh Conference on Neural Information Processing Systems.
Franke, K.@, Cai, Chenchen, Ponder, Kayla, Fu, Jiakun, Sokoloski, Sacha, Berens, Philipp, & Tolias, Andreas S. Asymmetric distribution of color-opponent response types across mouse visual cortex supports superior color vision in the sky. eLife.
Willeke, K. F., Restivo, K., Franke, K., Nix, A. F., Cadena, S. A., Shinn, T., Nealley, C., Rodriguez, G., Patel, S., Ecker, A. S., Sinz, F. H., & Tolias, A. S. Deep learning-driven characterization of single cell tuning in primate visual area V4 unveils topological organization. bioRxiv, 2023.05.12.540591.
Fu, Jiakun, Shrinivasan, Suhas, Ponder, Kayla, Muhammad, Taliah, Ding, Zhuokun, Wang, Eric, Ding, Zhiwei, Tran, Dat T, Fahey, Paul G, Papadopoulos, Stelios, Patel, Saumil, Reimer, Jacob, Ecker, Alexander S, Pitkow, Xaq, Haefner, Ralf M, Sinz, Fabian H, Franke, K.*, & Tolias, Andreas S*. Pattern completion and disruption characterize contextual modulation in mouse visual cortex. bioRxiv, 2023.03.13.532473.
Ding, Zhiwei, Tran, Dat T, Ponder, Kayla, Cobos, Erick, Ding, Zhuokun, Fahey, Paul G, Wang, Eric, Muhammad, Taliah, Fu, Jiakun, Cadena, Santiago A, Papadopoulos, Stelios, Patel, Saumil, Franke, K., Reimer, Jacob, Sinz, Fabian H, Ecker, Alexander S, Pitkow, Xaq, & Tolias, Andreas S. Bipartite invariance in mouse primary visual cortex. bioRxiv, 2023.03.15.532836.
Wang, E. Y., Fahey, P. G., Ponder, K., Ding, Z., Chang, A., Muhammad, T., Patel, S., Ding, Z., Tran, D., Fu, J., Papadopoulos, S., Franke, K., Ecker, A. S., Reimer, J., Pitkow, X., Sinz, F. H., & Tolias, A. S., Towards a Foundation Model of the Mouse Visual Cortex. bioRxiv, 2023.03.21.533548.


Franke, K.@*, Willeke, K. F.*, Ponder, K., Galdamez, M., Zhou, N., Muhammad, T., Patel, S., Froudarakis, E., Reimer, J., Sinz, F. H., and Tolias, A. S., State-dependent pupil dilation rapidly shifts visual feature selectivity. Nature, September 2022.
Szatko, K. P., Franke, K., What the eye tells the brain: retinal feature extraction. Neuroforum, 28(1), 13-19.
Idrees, S., Baumann, M.-P., Korympidou, M. M., Schubert, T., Kling, A., Franke, K., Hafed, Z. M., Franke, F., & Münch, T. A., Suppression without inhibition: how retinal computation contributes to saccadic suppression. Communications Biology, 5(1), 1-23.
Behrens, C., Yadav, S. C., Korympidou, M. M., Zhang, Y., Haverkamp, S., Irsen, S., Schaedler, A., Lu, X., Liu, Z., Lause, J., St-Pierre, F., Franke, K., Vlasits, A., Dedek, K., Smith, R. G., Euler, T., & Berens, P., Retinal horizontal cells use different synaptic sites for global feedforward and local feedback signaling. Curr. Biol., 32(3), 545-558.e5.
Liu, Z., Lu, X., Villette, V., Gou, Y., Colbert, K. L., Lai, S., Guan, S., Land, M. A., Lee, J., Assefa, T., Zollinger, D. R., Korympidou, M. M., Vlasits, A. L., Pang, M. M., Su, S., Cai, C., Froudarakis, E., Zhou, N., Patel, S. S., Smith, C. L., Ayon, A., Bizouard, P., Bradley, J., Franke, K., Clandinin, T. R., Giovannucci, A., Tolias, A. S., Reimer, J., & Dieudonné, S., Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy. Cell, 185(18), 3408-3425.e29.
Strauss, S., Korympidou, M. M., Ran, Y., Franke, K., Schubert, T., Baden, T., Berens, P., Euler, T., & Vlasits, A. L., Center-surround interactions underlie bipolar cell motion sensitivity in the mouse retina. Nat. Commun., 13(1), 1-18.
Höfling, L., Szatko, K. P., Behrens, C., Qiu, Y., Klindt, D. A., Jessen, Z., Schwartz, G. W., Bethge, M., Berens, P., Franke, K., Ecker, A. S., & Euler, T., A chromatic feature detector in the retina signals visual context changes. bioRxiv, 2022.11.30.518492.


Gonschorek, D., H{\"o}fling, L., Szatko, K. P., Franke, K., Schubert, T., Dunn, B., Berens, P., Klindt, D., & Euler, T., Removing Inter-Experimental Variability from Functional Data in Systems Neuroscience. Advances in Neural Information Processing Systems, 34, 3706--3719.
Qiu, Y., Zhao, Z., Klindt, D., Kautzky, M., Szatko, K. P., Schaeffel, F., Rifai, K., Franke, K., Busse, L., & Euler, T., Natural environment statistics in the upper and lower visual field are reflected in mouse retinal specializations. Curr. Biol., June 2021.


Schröder, C., Klindt, D., Strauss, S., Franke, K., Bethge, M., Euler, T., & Berens, P., System Identification with Biophysical Constraints: A Circuit Model of the Inner Retina. Advances in Neural Information Processing Systems, 33, 15439–15450.
Ran, Y., Huang, Z., Baden, T., Schubert, T., Baayen, H., Berens, P.*, Franke, K.*, & Euler, T.*, Type-specific dendritic integration in mouse retinal ganglion cells. Nat. Commun., 11(1), 2101.
Zhao, Z., Klindt, D. A., Maia Chagas, A., Szatko, K. P., Rogerson, L., Protti, D. A., Behrens, C., Dalkara, D., Schubert, T., Bethge, M., Franke, K., Berens, P., Ecker, A. S., & Euler, T., The temporal structure of the inner retina at a single glance. Sci. Rep., 10(1), 4399.
Szatko, K. P., Korympidou, M. M., Ran, Y., Berens, P., Dalkara, D., Schubert, T., Euler, T., & Franke, K., Neural circuits in the mouse retina support color vision in the upper visual field. Nat. Commun., 11(1), 3481.
Franke, K.@ and Vlasits, A., Unblinding with infrared nanosensors. Science, 368(6495), 1057–1058.


Vlasits, A. L., Euler, T., & Franke, K., Function first: classifying cell types and circuits of the retina. Curr. Opin. Neurobiol., 56, 8–15.
Euler, T., Franke, K., & Baden, T., Studying a Light Sensor with Light: Multiphoton Imaging in the Retina. Multiphoton Microscopy, Springer New York, 225–250.
Dhande, O. S., Stafford, B. K., Franke, K., El-Danaf, R., Percival, K. A., Phan, A. H., Li, P., Hansen, B. J., Nguyen, P. L., Berens, P., Taylor, W. R., Callaway, E., Euler, T., & Huberman, A. D., Molecular Fingerprinting of On-Off Direction-Selective Retinal Ganglion Cells Across Species and Relevance to Primate Visual Circuits. J. Neurosci., 39(1), 78–95.
Franke, K.*, Maia Chagas, A.*, Zhao, Z., Zimmermann, M. J. Y., Bartel, P., Qiu, Y., Szatko, K. P., Baden, T., & Euler, T., An arbitrary-spectrum spatial visual stimulator for vision research. Elife, 8.
Rogerson, L. E., Zhao, Z., Franke, K., Euler, T., & Berens, P., Bayesian hypothesis testing and experimental design for two-photon imaging data. PLoS Comput. Biol., 15(8), e1007205.


Franke, K. & Baden, T., General features of inhibition in the inner retina. J. Physiol., 595(16), 5507–5515.
Franke*, K., Berens, P.*, Schubert, T., Bethge, M., Euler, T., & Baden, T., Inhibition decorrelates visual feature representations in the inner retina. Nature, 542(7642), 439–444.


Baden, T.*, Berens, P.*, Franke, K.*, Román Rosón, M., Bethge, M., & Euler, T., The functional diversity of retinal ganglion cells in the mouse. Nature, 529(7586), 345–350.